مطالعه ژنتیکی تغییرات انرژی آزاد جایگاه اتصال miRNA و ارتباط آن با ویژگی‌های هیستوپاتولوژیک در سرطان کولورکتال

Ahmed, H. S., & Yalda, M. I. (2024). The receptor tyrosine kinase EphA2 and integrin-linked kinase expression in colorectal cancer in relation to the severity of the tumor. Medical Journal of Babylon, 21(Suppl. 1), S1–S7. https://doi.org/10.4103/mjbl.mjbl_221_23
Alavi, M., Mozafari, M. R., Ghaemi, S., Ashengroph, M., Hasanzadeh Davarani, F., & Mohammadabadi, M. (2022). Interaction of epigallocatechin gallate and quercetin with spike glycoprotein (S-glycoprotein) of SARS-CoV-2: In silico study. Biomedicines, 10(12), Article 3074. https://doi.org/10.3390/biomedicines10123074
Armaghany, T., Wilson, J. D., Chu, Q., & Mills, G. (2012). Genetic alterations in colorectal cancer. Gastrointestinal Cancer Research, 5(1), 19–27. https://pmc.ncbi.nlm.nih.gov/articles/PMC3348713/
Azzoni, C., Bottarelli, L., Campanini, N., Di Cola, G., Bader, G., Mazzeo, A., Salvemini, C., Morari, S., Di Mauro, D., Donadei, E., Roncoroni, L., Bordi, C., & Sarli, L. (2007). Distinct molecular patterns based on proximal and distal sporadic colorectal cancer: Arguments for different mechanisms in the tumorigenesis. International Journal of Colorectal Disease, 22(2), 115–126. https://doi.org/10.1007/s00384-006-0093-x
Barisciano, G., Colangelo, T., Rosato, V., Muccillo, L., Taddei, M. L., Ippolito, L., Chiarugi, P., Galgani, M., Bruzzaniti, S., Matarese, G., Fassan, M., Agostini, M., Bergamo, F., Pucciarelli, S., Carbone, A., Mazzoccoli, G., Colantuoni, V., Bianchi, F., & Sabatino, L. (2020). miR-27a is a master regulator of metabolic reprogramming and chemoresistance in colorectal cancer. British Journal of Cancer, 122(9), 1354–1366. https://doi.org/10.1038/s41416-020-0773-2 (Erratum published 2020, British Journal of Cancer, 122(10), 1576. https://doi.org/10.1038/s41416-020-0855-1)
Bilegsaikhan, E., Liu, H. N., Shen, X. Z., & Liu, T. T. (2018). Circulating miR-338-5p is a potential diagnostic biomarker in colorectal cancer. Journal of Digestive Diseases, 19(7), 404–410. https://doi.org/10.1111/1751-2980.12643
Bognár, G., Ledniczky, G., István, G., & Ondrejka, P. (2006). A colorectalis adenocarcinomák áttétképzésének molekuláris alapjai [Molecular mechanisms in development of colorectal cancer metastasis]. Magyar Sebészet, 59(5), 342–349. https://pubmed.ncbi.nlm.nih.gov/17201342/
Bray, F., Laversanne, M., Sung, H., Ferlay, J., Siegel, R. L., Soerjomataram, I., & Jemal, A. (2024). Global cancer statistics 2022: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries. CA: A Cancer Journal for Clinicians, 74(3), 229–263. https://doi.org/10.3322/caac.21834
Bray, F., & Møller, B. (2006). Predicting the future burden of cancer. Nature Reviews Cancer, 6(1), 63–74. https://doi.org/10.1038/nrc1781
Chen, W., Tong, K., & Yu, J. (2017). MicroRNA-130a is upregulated in colorectal cancer and promotes cell growth and motility by directly targeting forkhead box F2. Molecular Medicine Reports, 16(4), 5241–5248. https://doi.org/10.3892/mmr.2017.7257
de Sousa, I. V. F., Lopes, J. M. D., Nogueiro, J. P. M., Costa, T. R., Barbosa, L. E. R., & Aral, M. M. M. (2023). Histological tumor response predicts clinical outcome in patients with colorectal peritoneal metastasis treated with preoperative chemotherapy followed by cytoreduction and HIPEC. Pleura and Peritoneum, 8(1), 37–44. https://doi.org/10.1515/pp-2022-0117
Ferlay, J., Parkin, D. M., & Steliarova-Foucher, E. (2010). Estimates of cancer incidence and mortality in Europe in 2008. European Journal of Cancer, 46(4), 765–781. https://doi.org/10.1016/j.ejca.2009.12.014
Friedman, R. C., Farh, K. K.-H., Burge, C. B., & Bartel, D. P. (2009). Most mammalian mRNAs are conserved targets of microRNAs. Genome Research, 19(1), 92–105. https://doi.org/10.1101/gr.082701.108
Fu, T., Dai, L.-J., Wu, S.-Y., Xiao, Y., Ma, D., Jiang, Y.-Z., & Shao, Z.-M. (2021). Spatial architecture of the immune microenvironment orchestrates tumor immunity and therapeutic response. Journal of Hematology & Oncology, 14, Article 98. https://doi.org/10.1186/s13045-021-01103-4
Ghoshal, A., Shankar, R., Bagchi, S., Grama, A., & Chaterji, S. (2015). MicroRNA target prediction using thermodynamic and sequence curves. BMC Genomics, 16, Article 999. https://doi.org/10.1186/s12864-015-1933-2 (Erratum published 2016, BMC Genomics, 17, Article 216. https://doi.org/10.1186/s12864-016-2367-1)
Gong, J., Tong, Y., Zhang, H.-M., Wang, K., Hu, T., Shan, G., Sun, J., & Guo, A.-Y. (2012). Genome-wide identification of SNPs in microRNA genes and the SNP effects on microRNA target binding and biogenesis. Human Mutation, 33(1), 254–263. https://doi.org/10.1002/humu.21641
Heidarpour, F., Mohammadabadi, M. R., Zaidul, I. S. M., Maherani, B., Saari, N., Hamid, A. A., Abas, F., Manap, M. Y. A., & Mozafari, M. R. (2011). Use of prebiotics in oral delivery of bioactive compounds: A nanotechnology perspective. Pharmazie, 66(5), 319–324. https://doi.org/10.1691/ph.2011.0279
Hertweck, K. L., & Dasgupta, S. (2017). The landscape of mtDNA modifications in cancer: A tale of two cities. Frontiers in Oncology, 7, Article 262. https://doi.org/10.3389/fonc.2017.00262
Hong, Y.-G., Xin, C., Zheng, H., Huang, Z.-P., Yang, Y., Zhou, J.-D., Gao, X.-H., Hao, L., Liu, Q.-Z., Zhang, W., & Hao, L.-Q. (2020). miR-365a-3p regulates ADAM10-JAK-STAT signaling to suppress the growth and metastasis of colorectal cancer cells. Journal of Cancer, 11(12), 3634–3644. https://doi.org/10.7150/jca.42731 (Erratum published 2023, Journal of Cancer, 14(2), 318–321. https://doi.org/10.7150/jca.79828)
Karimzadeh, M. R., Zarin, M., Ehtesham, N., Khosravi, S., Soosanabadi, M., Mosallaei, M., & Pourdavoud, P. (2020). MicroRNA binding site polymorphism in inflammatory genes associated with colorectal cancer: Literature review and bioinformatics analysis. Cancer Gene Therapy, 27(10–11), 739–753. https://doi.org/10.1038/s41417-020-0172-0
Kong, Y., Trabucco, S. E., & Zhang, H. (2014). Oxidative stress, mitochondrial dysfunction and the mitochondria theory of aging. Interdisciplinary Topics in Gerontology, 39, 86–107. https://doi.org/10.1159/000358901
Liu, F., Dear, K., Huang, L., Liu, L., Shi, Y., Nie, S., Liu, Y., Lu, Y., & Xiang, H. (2016). Association between microRNA-27a rs895819 polymorphism and risk of colorectal cancer: A meta-analysis. Cancer Genetics, 209(9), 388–394. https://doi.org/10.1016/j.cancergen.2016.08.003
Liu, X. X., Wang, M., Xu, D., Yang, J. H., Kang, H. F., Wang, X. J., Lin, S., Yang, P. T., Liu, X. H., & Dai, Z. J. (2015). Quantitative assessment of the association between genetic variants in microRNAs and colorectal cancer risk. BioMed Research International, 2015, Article 276410. https://doi.org/10.1155/2015/276410
Mahan, L. K. (2016). Krause's food & the nutrition care process (14th ed.). Elsevier.
Martínez-Hernández, R., Sánchez de la Blanca, N., Sacristán-Gómez, P., Serrano-Somavilla, A., Muñoz De Nova, J. L., Sánchez Cabo, F., Heyn, H., Sampedro-Núñez, M., & Marazuela, M. (2024). Unraveling the molecular architecture of autoimmune thyroid diseases at spatial resolution. Nature Communications, 15(1), Article 5895. https://doi.org/10.1038/s41467-024-50192-5
Mohammadabadi, M. R., & Mozafari, M. R. (2018). Enhanced efficacy and bioavailability of thymoquinone using nanoliposomal dosage form. Journal of Drug Delivery Science and Technology, 47, 445–453. https://doi.org/10.1016/j.jddst.2018.08.019
Mohammadabadi, M. R., El-Tamimy, M., Gianello, R., & Mozafari, M. R. (2009). Supramolecular assemblies of zwitterionic nanoliposome-polynucleotide complexes as gene transfer vectors: Nanolipoplex formulation and in vitro characterization. Journal of Liposome Research, 19(2), 105–115. https://doi.org/10.1080/08982100802547326
Mortazavi, S. M., Mohammadabadi, M. R., & Mozafari, M. R. (2005). Applications and in vivo behaviour of lipid vesicles. In M. R. Mozafari (Ed.), Nanoliposomes: From fundamentals to recent developments (pp. 67–76). Elsevier.
Murayama, T., & Gotoh, N. (2019). Drug resistance mechanisms of cancer stem-like cells and their therapeutic potential as drug targets. Cancer Drug Resistance, 2(3), 457–470. https://doi.org/10.20517/cdr.2019.36
Nowatzki, J., Moller, B., & Demers, A. (2011). Projection of future cancer incidence and new cancer cases in Manitoba, 2006-2025. Chronic Diseases in Canada, 31(2), 71–78. https://pubmed.ncbi.nlm.nih.gov/21466757/
Pawlina, W. (2023). Histology: A text and atlas: With correlated cell and molecular biology (9th ed.). Wolters Kluwer.
Rehmsmeier, M., Steffen, P., Hochsmann, M., & Giegerich, R. (2004). Fast and effective prediction of microRNA/target duplexes. RNA, 10(10), 1507–1517. https://doi.org/10.1261/rna.5248604
Rong, G. Q., Zhang, X. M., Chen, B., Yang, X. D., Wu, H. R., & Gong, W. (2017). MicroRNA gene polymorphisms and the risk of colorectal cancer. Oncology Letters, 13(5), 3617–3623. https://doi.org/10.3892/ol.2017.5885
Ryan, B. M., Robles, A. I., & Harris, C. C. (2010). Genetic variation in microRNA networks: The implications for cancer research. Nature Reviews Cancer, 10(6), 389–402. https://doi.org/10.1038/nrc2867 (Erratum published 2010, Nature Reviews Cancer, 10(7), 523)
Shi, H., Chen, X., Jiang, H., Wang, X., Yu, H., Sun, P., & Sui, X. (2018). miR-148a suppresses cell invasion and migration in gastric cancer by targeting DNA methyltransferase 1. Oncology Letters, 15(4), 4944–4950. https://doi.org/10.3892/ol.2018.7907
Siegel, R. L., Kratzer, T. B., Giaquinto, A. N., Sung, H., & Jemal, A. (2025). Cancer statistics, 2025. CA: A Cancer Journal for Clinicians, 75(1), 10–45. https://doi.org/10.3322/caac.21871
Smolarz, B., Durczyński, A., Romanowicz, H., Szyłło, K., & Hogendorf, P. (2022). miRNAs in cancer (review of literature). International Journal of Molecular Sciences, 23(5), Article 2805. https://doi.org/10.3390/ijms23052805
Song, Y., Xu, Y., Wang, Z., Chen, Y., Yue, Z., Gao, P., Xing, C., & Xu, H. (2012). MicroRNA-148b suppresses cell growth by targeting cholecystokinin-2 receptor in colorectal cancer. International Journal of Cancer, 131(5), 1042–1051. https://doi.org/10.1002/ijc.26485
Torre, L. A., Bray, F., Siegel, R. L., Ferlay, J., Lortet-Tieulent, J., & Jemal, A. (2015). Global cancer statistics, 2012. CA: A Cancer Journal for Clinicians, 65(2), 87–108. https://doi.org/10.3322/caac.21262
Tripathi, S., Sharma, Y., & Kumar, D. (2025). Unveiling the link between chronic inflammation and cancer. Metabolism Open, 25, Article 100347. https://doi.org/10.1016/j.metop.2025.100347
Wang, Y., Li, Y., Ma, Z., Yang, W., & Ai, C. (2010). Mechanism of microRNA-target interaction: Molecular dynamics simulations and thermodynamics analysis. PLoS Computational Biology, 6(7), Article e1000866. https://doi.org/10.1371/journal.pcbi.1000866
Wu, M., Jolicoeur, N., Li, Z., Zhang, L., Fortin, Y., L'Abbe, D., Yu, Z., & Shen, S. H. (2008). Genetic variations of microRNAs in human cancer and their effects on the expression of miRNAs. Carcinogenesis, 29(9), 1710–1716. https://doi.org/10.1093/carcin/bgn073
Wu, Z., Xiao, C., Long, J., Huang, W., You, F., & Li, X. (2024). Mitochondrial dynamics and colorectal cancer biology: Mechanisms and potential targets. Cell Communication and Signaling, 22(1), Article 91. https://doi.org/10.1186/s12964-024-01490-4
Xu, L., & Tang, W. (2016). Associations of polymorphisms in miR-196a2, miR-146a and miR-149 with colorectal cancer risk: A meta-analysis. Pathology & Oncology Research, 22(2), 261–267. https://doi.org/10.1007/s12253-014-9843-1
Yang, M., Tang, X., Wang, Z., Wu, X., Tang, D., & Wang, D. (2019). miR-125 inhibits colorectal cancer proliferation and invasion by targeting TAZ. Bioscience Reports, 39(12), Article BSR20190193. https://doi.org/10.1042/BSR20190193
Yue, D., Liu, H., & Huang, Y. (2009). Survey of computational algorithms for microRNA target prediction. Current Genomics, 10(7), 478–492. https://doi.org/10.2174/138920209789208219
Zaha, D. C. (2014). Significance of immunohistochemistry in breast cancer. World Journal of Clinical Oncology, 5(3), 382–392. https://doi.org/10.5306/wjco.v5.i3.382
Zarrabi, A., Alipoor Amro Abadi, M., Khorasani, S., Mohammadabadi, M., Jamshidi, A., Torkaman, S., Taghavi, E., Mozafari, M. R., & Rasti, B. (2020). Nanoliposomes and tocosomes as multifunctional nanocarriers for the encapsulation of nutraceutical and dietary molecules. Molecules, 25(3), Article 638. https://doi.org/10.3390/molecules25030638