Abbasi Holasou H, Abdollahi Mandoulakani B, Hassanzadeh Ghorttapeh A (2020) Association analysis for yield and plant characteristics in Iranian flax genotypes (Linum usitatissimum L.) using IRAP and REMAP markers. Cell Mol Res (Iran J Biol) 33, 484-495 (In Persian).
Abdollahi Mandoulakani B, Alami A, Esfahani M (2010) Association analysis for morphological traits in peanut (Arachis hypogea L.) using microsatellite markers. Iran J Crop Sci 12, 510-519 (In Persian).
Abdollahi Mandoulakani B, Azizi H (2014) Identification of ISSR markers associated with morphological traits in cultivated alfalfa (Medicago sativa L.) populations. Cell Mole Res (Iran J Biol) 27, 260-268 (In Persian).
Abuhashem YS, Khalil HB, El-Tahawey MAFA et al. (2023) Exploring the morphological and genetic diversity of Egyptian basil landraces (Ocimum sp.) for future breeding strategies. Beni-Suef Univ J Basic Appl Sci 12, 70.
Afzal S, Saleem M, Yasmin R, et al. (2010) Pre and post cloning characterization of a beta-1, 4-endoglucanase from Bacillus sp. Mol Bio Res 37, 23–1717.
Aghaali Z, Darvishzadeh R, Aghaei M (2018) Association Analysis for Morphological Traits in Iranian Basil Accessions Using ISSR Marker. Mod J Biotech 9(1), 93-102 (In Persian).
Ahmed TYA, Hussein MH, El-Maaty SA, Moghaieb REA (2021) Detection of genetic variation among five basil species by using ISSR, SCOT and SRAP markers. Inter J Health Sci 6(S6), 9909–9922.
Akyol I, Comlekcioglu U, Kar B, et al. (2009) Cloning of a xylanase gene xyn2A from rumen fungus Neocallimastix sp. GMLF2 in Escherichia coli and its partial characterization. Biologia 64, 664–670.
Altıntaş S, Toklu F, Kafkas S et al (2008) Estimating genetic diversity in durum and bread wheat cultivars from Turkey using AFLP and SAMPL markers. Plant breed 127, 9-14.
Amininasab A, Ebrahimi MA, Ebadi AA, and Ghodsi M (2012) Study of genetic variation in Iranian rice (Oryza sativa L.) varieties using by molecular markers linked with drought resistance genes. Crop biotech 2, 15-25 (In Persian).
Amirmoradi B, Talebi R, Karami E (2012) Comparison of genetic variation and differentiation among annual Cicer species using start codon targeted (SCoT) polymorphism, DAMD-PCR, and ISSR markers. Plant system evolu 298, 1679-1688.
Ashraf Mehrabi A, Shirvani H (2022) Evaluation of the efficiency of SCoT molecular marker in the study of genetic relationships between Aegilops and Triticum diploid species. Cell Mole Res (Iran J Biol) 35, 105-121 (In Persian).
Ataie R, Mohammadi VA, Talei AR and Taqvi MR (2015) Relationship mapping of yield and some important agricultural traits in barley (Hordeum vulgare L). Mod Gen J 12(3), 411-433 (In Persian).
Badakhshande F, Sedighi Dehkordi F, Mortazavi SHM (2018) The Effect of Plant Density and Cultivar on Morphological Characteristics, Yield and Quality Traits of Basil (Ocimum basilicum L.) in Hydroponic System. J Horti Sci 32, 263-272 (In Persian).
Bhardwaj N, Kumar B, Verma P (2019) A detailed overview of xylanases: an emerging biomolecule for current and future prospective. Bioresour Bioprocess 6, 40.
Bilgin S, Ulusu Y, Kudug H, Gokce I (2018) Cloning, Expression and Characterization of Xylanase (xyn-akky1) from Bacillus subtilis in Escherichia coli. Sakarya Uni J Sci 22, 1508–1517.
Binesh S, Akbari GhA, Soltani E, Amini F (2018) Quantifying the germination response of different Basil accessions (Ocimum basilicum L.) to temperature. Crop Improve (J Agri Crops Pro) 20, 427-439 (In Persian).
Botstein D, White RL, Skolnick M, Davis RW (1980) Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet 32, 314– 331.
Collard BC, Mackill DJ (2009) Start codon targeted (SCoT) polymorphism: a simple, novel DNA marker technique for generating gene-targeted markers in plants. Plant mole biol report 27, 86-93.
Dhiman SS, Sharma J, Battan B (2008) Industrial applications and future prospects of microbial xylanases. Bio Resource 3, 1377–1402.
Doyle J (1991) DNA protocols for plants. In: Molecular techniques in taxonomy. Springer, 283-293.
Engberg M, Hedemann S, Steenfeldt S, Jensen B (2004) Influence of whole wheat and xylanase on broiler performance and microbial composition and activity in the digestive tract. Poult Sci 83, 925–938.
Fajardo P, Pastrana L, Endez J, et al. (2012) Effects of Feeding of Two Potentially Probiotic Preparations from Lactic Acid Bacteria on the Performance and Faecal Microflora of Broiler Chickens. The Sci World J 23, 1–9.
Farshadfar M, Moradzade N, Farshadfar E, Shirvani H (2017) Genetic diversity among fennel (Fueniculum vulgare Mill.) accessions using morphological and SCoT markers. Iran J Range Fore Plant Breed Gene Res 25, 212-231 (In Persian).
Farshadfar M, Shirvani H, Amjadian M, Yaghotipoor A (2018) Application of SCoT marker to discriminate Lolium perenne and Lolium multiflorum species. Iran J Range Fore Plant Breed Gene Res 26, 206-220 (In Persian).
Farshadfar MF, Faraz Sh, Farshadfar A, Jafar AA (2017) Identification of microsatellite markers in a part of field alfalfa (Medicago sativa L.) of Iran. Mod Gene J 5, 57-66 (In Persian).
Glickman JF, Schmid A (2007) Farnesyl pyrophosphate synthase: real-time kinetics and inhibition by nitrogen-containing bisphosphonates in a scintillation assay. Assay Drug Dev Technol 5, 205–214.
Hammer Ø, Harper D, Ryan P (2001) PAST: Paleontological statistics software package for education and data analysis. Palaeontol Electron 4, 9-15.
Hristov AN, Oh J, Lee C, et al. (2013) Mitigation of greenhouse gas emissions. In Gerber, PJ, Henderson, B and Makkar, HPS. Eds. Livestock production–a review of technical options for non-CO2 emissions. FAO Anim Prod Health Paper 177.
Ivandic V, Hackett CA, Nevo E et al. (2002) Analysis of simple sequence repeats (SSRs) in wild barley from the Fertile Crescent: associations with ecology, geography and flowering time. Plant Mole Biol 48, 511-527.
Jie H, Li Z, Wang P, et al. (2017) A simple method based on Sanger sequencing and MS Word wildcard searching to identify Cas9-induced frameshift mutations. Lab Invest 97, 1500–1507.
Kalendar R (2007) Fast PCR: a PCR primer and probe design and repeat sequence searching software with additional tools for the manipulation and analysis of DNA and protein. Helsinki, Finland.
Karim Koshteh R, Sabouri H (2015) Ricedrought-tolerant genotypes recognition using multivariate analysis. Agro J 11(4), 13-24 (In Persian).
Khodarahmi M, Mohammadi S, Jalalkamali M (2009) Identification of informative marker for yellow rust resistant related cultivars. In: The 6th national biote conger Iran, 13-15.
Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227, 680–685.
Laura R, Jarboe AB, Ping LB, et al. (2012) Optimization of enzyme parameters for fermentative production of biorenewable fuels and chemicals. Comput Struct Biotechnol J 3, e10005.
Liu BH (1998) Statistical genomics: Linkage, mapping and QTL analysis. CRC Press, Boca Raton, Florida, USA.
Luo C, He X-H, Chen H et al. (2012) Genetic relationship and diversity of Mangifera indica L.: revealed through SCoT analysis. Gene res crop evolu 59, 1505-1515.
Ma L, Aizhan R, Wang X, et al. (2020) Cloning and characterization of low‑temperature adapted GH5‑CBM3 endo‑cellulase from Bacillus subtilis 1AJ3 and their application in the saccharification of switchgrass and coffee grounds. AMB Expr 10, 42.
Maleki Rad Z, Zaynali Nezhad K, Pahlavani MH (2021) Assessment of SSR marker-trait association for yield related characters in bread wheat. Mod Gene J, 16:85-90 (In Persian).
Mao S, Lu Z, Zhang CH et al. (2013) Purification, characterization, and heterologous expression of a thermostable β-1, 3-1, 4-glucanase from Bacillus altitudinis YC-9. Appl Biochem Biotechnol 169, 960–975.
McCleary BV (2001) Analysis of feed enzymes. In: Enzymes in Farm Animal Nutrition, M.R. Bedford and G.G. Partridge (Eds.). CAB International, 406.
Mengoni A, Gori A, Bazzicalupo M (2000) Use of RAPD and microsatellite (SSR) variation to assess genetic relationships among populations of tetraploid alfalfa, Medicago sativa. Plant breed 119, 311-317.
Miller GL (1959) Use of dinitrosalicylic acid reagent for determination of reducing sugars. Anal Chem 31, 426–428.
Moazeni S, Mohammadabadi MR, Sadeghi M, et al. (2016) Association between UCP Gene Polymorphisms and Growth, Brreeding Value of Growth and Reproductive Traits in Mazandaran Indigenous Chicken. Open J Anim Sci 6, 1-8.
Mohammadifar A, Faghih Imani SA, Mohammadabadi MR, Soflaei M (2014) The effect of TGFb3 gene on phenotypic and breeding values of body weight traits in Fars native fowls. Agric Biotech J 5, 125-136 (In Persian).
Mohammadifar A, Mohammadabadi MR (2017) The Effect of Uncoupling Protein Polymorphisms on Growth, Breeding Value of Growth and Reproductive Traits in the Fars Indigenous Chicken. Iran J Appl Anim Sci 7, 679-685.
Mohammadifar A, Mohammadabadi MR (2018) Melanocortin-3 receptor (mc3r) gene association with growth and egg production traits in Fars indigenous chicken. Malay Appl Biol 47, 85–90.
Mulpuri S, Muddanuru T, Francis G (2013) Start codon targeted (SCoT) polymorphism in toxic and non-toxic accessions of Jatropha curcas L. and development of a codominant SCAR marker. Plant sci 207, 117-127.
Ndazigaruye G,
Kim DH,
Kang CH, et al. (2019) Effects of Low-Protein Diets and Exogenous Protease on Growth Performance, Carcass Traits, Intestinal Morphology, Cecal Volatile Fatty Acids and Serum Parameters in Broilers. Anim 9, 226.
Nei M (1972) Genetic distance between populations. The Am Nat 106, 283-292.
Nikkerdar F, Farshadfar M, Ebrahimi MA, Shirvani H (2018) Genetic Diversity among Fennel (Fueniculum Vulgare Mill.) Landrace using Scot Markers . J Crop Breed 9 :95-102 (In Persian).
Noorian M (2020) Genetic variation among Iranian genotypes of Malva (Malva neglecta) using Start codon targeted (SCoT). Cell Mole Res (Iran J Biol) 33, 116-125 (In Persian).
Osek M, Milczarek A, Janocha A, Świnarska R (2010) Effect of triticale as a partial or complete wheat and maize substitute in broiler chicken diets on growth performance, slaughter value and meat quality. Ann Anim Sci 10, 275–283.
Pastor FIJ, Gallardo O, Sanz-Aparicio J (2007) Xylanases: molecular properties and applications. In: Polaina J, MacCabe AP (eds) Industrial enzymes. Springer, 65–82.
Pour-Aboughadareh AR, Etminan AR, Shooshtari L, Maleki-Tabrizi N (2019) Comparative assessment of SCoT and CBDP markers for investigation of genetic diversity existing in different aegilops species. Agri Biotech J 11, 153-174 (In Persian).
Powell W, Morgante M, Andre C et al. (1996) The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Mol Breed 2, 225-238.
Purushothaman B, PrasannaSrinivasan R, Suganthi P et al. (2018) A comprehensive review on Ocimum basilicum. J Natural Rem, 71-85.
Rashidi Monfared S, Mardi S, Hosseinzadeh A, Taqavi MR (2008) Correlation analysis between important agronomic traits and SSAP retrotransposon markers in durum wheat samples. Mod Gene J 3(2), 29-35 (In Persian).
Rezaee Moadab A, Nabavi Kalat SM (2012) The Effect of Vermicompost and Biological Fertilizer Application on Seed Yield and Yield Components of Basil (Ocimum basilicum L.). J Crop Ecophysio 6, 22: 157-170 (In Persian).
Sadeghi S, Rahnavard A, Ashrafi ZY (2009) The effect of plant density and sowing date on yield of Basil (Ocimum basilicum L.) in Iran. J Agri Technol 5, 413-422.
Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Laboratory, Cold Spring Harbor, NY.
Satya P, Karan M, Jana S et al. (2015) Start codon targeted (SCoT) polymorphism reveals genetic diversity in wild and domesticated populations of ramie (Boehmeria nivea L. Gaudich.), a premium textile fiber producing species. Meta gene 3, 62-70.
Shabahang R, Samsampoor D, Zeinali H, Ebrahimi (2022) Evaluation of genetic and biochemical variation in six basil (Ocimum basilicum L.) populations. Irani J Range Forest Plant Breed Gene Res 30, 56-71 (In Persian).
Shaghaghi, J., kordenaeej, A, qaderi, A (2019) Evaluation of Genetic Diversity of Papaver bractaetum Lindl. Populations in Alborz Mountain Using SCoT Molecular Markers. J Med Plants 18 (72), 90-102 (In Persian).
Shah-Ghobadi H, Shabanian N, Khadivi A, Rahmani MS (2018) Analysis of genetic diversity of Pistacia atlantica Desf. populations from Zagros forests using ISSR, IRAP and SCoT molecular markers. I Irani J Range Forest Plant Breed Gene Res 26, 177-195 (In Persian).
Shannon CE (2001) A mathematical theory of communication. ACM SIGMOBILE mobile comput communicat rev 5, 3-55.
Shirvani H, Amjadian M, noorian AM (2020) Genetic variation study of Teucrium polium genotypes in the west of Iran using SCoT molecular markers. Cell Mole Res (Iran J Biol) 33, 343-353 (In Persian).
Singh S (2003) Cluster analysis for heterosis in wheat [Triticum aestivum (L.) em. Theil.]. Indian J Gen Plant Breed 63, 249-250.
Soleimani V, Baum B, Johnson D (2002) AFLP and pedigree-based genetic diversity estimates in modern cultivars of durum wheat [Triticum turgidum L. subsp. durum (Desf.) Husn.]. Theor Appl Gen 104, 350-357.
Stachel M, Lelley T, Grausgruber H, Vollmann J (2000) Application of microsatellites in wheat (Triticum aestivum L.) for studying genetic differentiation caused by selection for adaptation and use. Theor App Gene 100, 242-248.
Tessier C, David J, This P et al. (1999) Optimization of the choice of molecular markers for varietal identification in Vitis vinifera L. Theor Appl Genet 98, 171– 177.
Timmappaiah W, Shobha G, Melwyn S (2009) Assessmant of genetic diversity in Cashew germplasm using and ISSR markers. Sci Hortic 120, 411-417.
Tripathi L, Tripathi JN (2003) Role of biotechnology in medicinal plants. Trop J pharma res 2, 243-253.
Virk P, Ford-Lloyd B, Jackson M et al. (1996) Marker-assisted prediction of agronomic traits using diverse rice germplasm. In: Rice Genetics III: (In 2 Parts). World Sci, 307-316.
Virk PS, Ford-Lloyd BV, Jackson MT, Newbury HJ (1995) Use of RAPD for the study of diversity within plant germplasm collections. Heredity 74, 170-179.
Wang J, Zhang H, Wu M, Tang C (2011) Cloning and sequence analysis of a novel xylanase gene, Auxyn10A, from Aspergillus usamii. Biotechnol Lett 33, 1029–1038.
Wang W,
Yan-long J, Yi-chun L, et al. (2018) Impact of different promoters, promoter mutation, and an enhancer on recombinant protein expression in CHO cells. Sci Report 7, 10416.
Wei T, Simko V, Levy M et al. (2017) Package ‘corrplot’. Statistician 56, e24.
Yeh FC (1999) POPGENE (version 1.3.1). Microsoft window-bases freeware for population genetic analysis. http://www ualberta ca/~ fyeh/.
Zabet M, Pishghadam S, Alizadeh Z (2022) Efficiency of RAPD and SCoT molecular markers in the differentiation of camelthorn (Alhagi maurorum) populations. Iran J Rang Fores Plant Breed Gene Res 30, 16-38 (In Persian).
Zaccardelli M, Gnocchi S, Carelli M, Scotti C (2003) Variation among and within Italian alfalfa ecotypes by means of bio-agronomic characters and amplified fragment length polymorphism analyses. Plant Breed 122, 61-65.
Zamani N, Zamani V, Mirzaei Kh (2016) Genetic diversity analysis of Ziziphora tenuior L. using SCoT markers. Iran J Rang Fores Plant Breed Gene Res 24(2), 177-189 (In Persian).
Yadav P, Maharjan J, Korpole S, et al. (2018) Production, Purification, and Characterization of Thermostable Alkaline Xylanase From Anoxybacillus kamchatkensis NASTPD13. Bioeng Biotechnol 6, e65.